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2023
Su C, Hou Y, Zhou M, Rajendran S, Maasch JRMA, Abedi Z, Zhang H, Bai Z, Cuturrufo A, Guo W et al..  2023.  Biomedical discovery through the integrative biomedical knowledge hub (iBKH).. iScience. 26(4):106460.
Wang D, Fan F, Wu Z, Liu R, Wang F, Yu H.  2023.  CTformer: convolution-free Token2Token dilated vision transformer for low-dose CT denoising.. Phys Med Biol. 68(6)
Rajendran S, Xu Z, Pan W, Ghosh A, Wang F.  2023.  Data heterogeneity in federated learning with Electronic Health Records: Case studies of risk prediction for acute kidney injury and sepsis diseases in critical care.. PLOS Digit Health. 2(3):e0000117.
Zang C, Zhang Y, Xu J, Bian J, Morozyuk D, Schenck EJ, Khullar D, Nordvig AS, Shenkman EA, Rothman RL et al..  2023.  Data-driven analysis to understand long COVID using electronic health records from the RECOVER initiative.. Nat Commun. 14(1):1948.
Zhang H, Zang C, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Zhang Y, Nordvig AS et al..  2023.  Data-driven identification of post-acute SARS-CoV-2 infection subphenotypes.. Nat Med. 29(1):226-235.
Varma JK, Zang C, Carton TW, Block JP, Khullar DJ, Zhang Y, Weiner MG, Rothman RL, Schenck EJ, Xu Z et al..  2023.  Excess burden of respiratory and abdominal conditions following COVID-19 infections during the ancestral and Delta variant periods in the United States: An EHR-based cohort study from the RECOVER Program.. medRxiv.
Zhang Y, Hu H, Fokaidis V, V CLewis, Xu J, Zang C, Xu Z, Wang F, Koropsak M, Bian J et al..  2023.  Identifying environmental risk factors for post-acute sequelae of SARS-CoV-2 infection: An EHR-based cohort study from the recover program.. Environ Adv. 11:100352.
Xu J, Zhang H, Zhang H, Bian J, Wang F.  2023.  Machine learning enabled subgroup analysis with real-world data to inform clinical trial eligibility criteria design.. Sci Rep. 13(1):613.
Mehta B, Goodman S, DiCarlo E, Jannat-Khah D, J Gibbons AB, Otero M, Donlin L, Pannellini T, Robinson WH, Sculco P et al..  2023.  Machine learning identification of thresholds to discriminate osteoarthritis and rheumatoid arthritis synovial inflammation.. Arthritis Res Ther. 25(1):31.
Adekkanattu P, Rasmussen LV, Pacheco JA, Kabariti J, Stone DJ, Yu Y, Jiang G, Luo Y, Brandt PS, Xu Z et al..  2023.  Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study.. Sci Rep. 13(1):294.
Khullar D, Zhang Y, Zang C, Xu Z, Wang F, Weiner MG, Carton TW, Rothman RL, Block JP, Kaushal R.  2023.  Racial/Ethnic Disparities in Post-acute Sequelae of SARS-CoV-2 Infection in New York: an EHR-Based Cohort Study from the RECOVER Program.. J Gen Intern Med. :1-10.
Zang C, Hou Y, Schenck E, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Nordvig A et al..  2023.  Risk Factors and Predictive Modeling for Post-Acute Sequelae of SARS-CoV-2 Infection: Findings from EHR Cohorts of the RECOVER Initiative.. Res Sq.
Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y.  2023.  Single-cell multi-omic topic embedding reveals cell-type-specific and COVID-19 severity-related immune signatures.. bioRxiv.
2022
Xu J, Xiao Y, Wang WHui, Ning Y, Shenkman EA, Bian J, Wang F.  2022.  Algorithmic fairness in computational medicine.. EBioMedicine. 84:104250.
Brendel M, Su C, Bai Z, Zhang H, Elemento O, Wang F.  2022.  Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review.. Genomics Proteomics Bioinformatics. 20(5):814-835.
Mehta B, Ho K, Ling V, Goodman S, Parks M, Ravi B, Banerjee S, Wang F, Ibrahim S, Cram P.  2022.  Are Income-based Differences in TKA Use and Outcomes Reduced in a Single-payer System? A Large-database Comparison of the United States and Canada. Clin Orthop Relat Res. 480(9):1636-1645.
Xu Z, Su C, Xiao Y, Wang F.  2022.  Artificial intelligence for COVID-19: battling the pandemic with computational intelligence.. Intell Med. 2(1):13-29.
Min JY, Simmons W, Banerjee S, Wang F, Williams N, Zhang Y, Reese AB, Mushlin AI, Flory JH.  2022.  Association between antidiabetic drug use and the risk of COVID-19 hospitalization in the INSIGHT Clinical Research Network in New York City.. Diabetes Obes Metab. 24(7):1402-1405.
Lin M, Hou B, Liu L, Gordon M, Kass M, Wang F, Van Tassel SH, Peng Y.  2022.  Automated diagnosing primary open-angle glaucoma from fundus image by simulating human's grading with deep learning.. Sci Rep. 12(1):14080.
Min JYoung, Williams N, Simmons W, Banerjee S, Wang F, Zhang Y, Reese AB, Mushlin AI, Flory JH.  2022.  Baseline haemoglobin A1c and the risk of COVID-19 hospitalization among patients with diabetes in the INSIGHT Clinical Research Network.. Diabet Med. 39(5):e14815.
Adler DA, Wang F, Mohr DC, Estrin D, Livesey C, Choudhury T.  2022.  A call for open data to develop mental health digital biomarkers.. BJPsych Open. 8(2):e58.
Tripathi S, Malhotra A, Qazi M, Chou J, Wang F, Barkan S, Hellmers N, Henchcliffe C, Sarva H.  2022.  Clinical Review of Smartphone Applications in Parkinson's Disease.. Neurologist. 27(4):183-193.
Yuan Z, Zhao Z, Sun H, Li J, Wang F, Yu S.  2022.  CODER: Knowledge-infused cross-lingual medical term embedding for term normalization.. J Biomed Inform. 126:103983.
Konnaris MA, Brendel M, Fontana MAlan, Otero M, Ivashkiv LB, Wang F, Bell RD.  2022.  Computational pathology for musculoskeletal conditions using machine learning: advances, trends, and challenges.. Arthritis Res Ther. 24(1):68.
Zeng X, Wang F, Luo Y, Kang S-G, Tang J, Lightstone FC, Fang EF, Cornell W, Nussinov R, Cheng F.  2022.  Deep generative molecular design reshapes drug discovery.. Cell Rep Med. 3(12):100794.