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Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y.  2023.  Single-cell multi-omic topic embedding reveals cell-type-specific and COVID-19 severity-related immune signatures.. bioRxiv.
Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y.  2024.  Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique.. STAR Protoc. 5(2):103066.
Zhang S-Q, Wang F, Fan F-L.  2022.  Neural Network Gaussian Processes by Increasing Depth.. IEEE Trans Neural Netw Learn Syst. PP
Zhang Y, Zhang Y, Sholle E, Abedian S, Sharko M, Turchioe MReading, Wu Y, Ancker JS.  2020.  Assessing the impact of social determinants of health on predictive models for potentially avoidable 30-day readmission or death.. PLoS One. 15(6):e0235064.
Zhang WZ, Rice MC, Hoffman KL, Oromendia C, Barjaktarevic IZ, J Wells M, Hastie AT, Labaki WW, Cooper CB, Comellas AP et al..  2020.  Association of urine mitochondrial DNA with clinical measures of COPD in the SPIROMICS cohort.. JCI Insight. 5(3)
Zhang Y, Hu H, Fokaidis V, V CLewis, Xu J, Zang C, Xu Z, Wang F, Koropsak M, Bian J et al..  2023.  Identifying environmental risk factors for post-acute sequelae of SARS-CoV-2 infection: An EHR-based cohort study from the recover program.. Environ Adv. 11:100352.
Zhang X, Chou J, Liang J, Xiao C, Zhao Y, Sarva H, Henchcliffe C, Wang F.  2019.  Data-Driven Subtyping of Parkinson's Disease Using Longitudinal Clinical Records: A Cohort Study.. Sci Rep. 9(1):797.
Zhang H, Zang C, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Zhang Y, Nordvig AS et al..  2023.  Data-driven identification of post-acute SARS-CoV-2 infection subphenotypes.. Nat Med. 29(1):226-235.
Zeng X, Wang F, Luo Y, Kang S-G, Tang J, Lightstone FC, Fang EF, Cornell W, Nussinov R, Cheng F.  2022.  Deep generative molecular design reshapes drug discovery.. Cell Rep Med. 3(12):100794.
Zang C, Zhang Y, Xu J, Bian J, Morozyuk D, Schenck EJ, Khullar D, Nordvig AS, Shenkman EA, Rothman RL et al..  2023.  Data-driven analysis to understand long COVID using electronic health records from the RECOVER initiative.. Nat Commun. 14(1):1948.
Zang C, Hou Y, Schenck EJ, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Nordvig AS et al..  2024.  Identification of risk factors of Long COVID and predictive modeling in the RECOVER EHR cohorts.. Commun Med (Lond). 4(1):130.
Zang C, Hou Y, Schenck E, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Nordvig A et al..  2023.  Risk Factors and Predictive Modeling for Post-Acute Sequelae of SARS-CoV-2 Infection: Findings from EHR Cohorts of the RECOVER Initiative.. Res Sq.
Zang X, Krebs E, Wang L, Marshall BDL, Granich R, Schackman BR, Montaner JSG, Nosyk B.  2019.  Structural Design and Data Requirements for Simulation Modelling in HIV/AIDS: A Narrative Review.. Pharmacoeconomics.
Zang C, Goodman M, Zhu Z, Yang L, Yin Z, Tamas Z, Sharma VMohan, Wang F, Shao N.  2022.  Development of a screening algorithm for borderline personality disorder using electronic health records.. Sci Rep. 12(1):11976.
Zacharias N, Wang GJ, Sedrakyan A, Columbo JA, Boyle JR, Goodney PP.  2019.  Using the Idea, Development, Exploration, Assessment, Long-Term Study Framework for Devices (IDEAL-D) to Better Understand the Evolution of Evidence Surrounding Fenestrated Abdominal Aortic Endovascular Grafts.. Ann Vasc Surg. 59:293-299.
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Yuan Z, Zhao Z, Sun H, Li J, Wang F, Yu S.  2022.  CODER: Knowledge-infused cross-lingual medical term embedding for term normalization.. J Biomed Inform. 126:103983.
Yu H, Chen Z, Ballman KV, Watson MA, Govindan R, Lanc I, Beer DG, Bueno R, Chirieac LR, Chui MHerman et al..  2019.  Correlation of PD-L1 Expression with Tumor Mutation Burden and Gene Signatures for Prognosis in Early-Stage Squamous Cell Lung Carcinoma.. J Thorac Oncol. 14(1):25-36.
Ying R, Fekadu L, Schackman BR, Verguet S.  2019.  Spatial Distribution and Characteristics of HIV Clusters in Ethiopia.. Trop Med Int Health.
Yin MT, RoyChoudhury A, Bucovsky M, Colon I, Ferris DC, Olender S, Agarwal S, Sharma A, Zeana C, Zingman B et al..  2019.  A Randomized Placebo-Controlled Trial of Low- Versus Moderate-Dose Vitamin D3 Supplementation on Bone Mineral Density in Postmenopausal Women With HIV.. J Acquir Immune Defic Syndr. 80(3):342-349.
Yeo HL, Dolan PT, Mao J, Sosa JA.  2019.  Association of Demographic and Program Factors With American Board of Surgery Qualifying and Certifying Examinations Pass Rates.. JAMA Surg.
Yazdavar AHossein, Mahdavinejad MSaeid, Bajaj G, Romine W, Sheth A, Monadjemi AHassan, Thirunarayan K, Meddar JM, Myers A, Pathak J et al..  2020.  Multimodal mental health analysis in social media.. PLoS One. 15(4):e0226248.
Yan PZ, Wang F, Kwok N, Allen BB, Keros S, Grinspan Z.  2019.  Automated spectrographic seizure detection using convolutional neural networks.. Seizure. 71:124-131.
Yan P, Melman T, Yan S, Otgonsuren M, Grinspan Z.  2017.  Evaluation of a novel median power spectrogram for seizure detection by non-neurophysiologists.. Seizure. 50:109-117.
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Xu J, Guo Y, Wang F, Xu H, Lucero R, Bian J, Prosperi M.  2022.  Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine.. BMJ Open. 12(6):e059715.
Xu J, Mao C, Hou Y, Luo Y, Binder JL, Zhou Y, Bekris LM, Shin J, Hu M, Wang F et al..  2022.  Interpretable deep learning translation of GWAS and multi-omics findings to identify pathobiology and drug repurposing in Alzheimer's disease.. Cell Rep. 41(9):111717.