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2024
He X-Y, Gao Y, Ng D, Michalopoulou E, George S, Adrover JM, Sun L, Albrengues J, Daßler-Plenker J, Han X et al..  2024.  Chronic stress increases metastasis via neutrophil-mediated changes to the microenvironment.. Cancer Cell. 42(3):474-486.e12.
He X, Wei R, Huang Y, Chen Z, Lyu T, Bost S, Tong J, Li L, Zhou Y, Li Z et al..  2024.  Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data.. Alzheimers Dement (Amst). 16(3):e12613.
He X, Wei R, Huang Y, Chen Z, Lyu T, Bost S, Tong J, Li L, Zhou Y, Li Z et al..  2024.  Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data.. Alzheimers Dement (Amst). 16(3):e12613.
He X, Wei R, Huang Y, Chen Z, Lyu T, Bost S, Tong J, Li L, Zhou Y, Li Z et al..  2024.  Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data.. Alzheimers Dement (Amst). 16(3):e12613.
Su C, Hou Y, Xu J, Xu Z, Zhou M, Ke A, Li H, Xu J, Brendel M, Maasch JRMA et al..  2024.  Identification of Parkinson's disease PACE subtypes and repurposing treatments through integrative analyses of multimodal data.. NPJ Digit Med. 7(1):184.
Su C, Hou Y, Xu J, Xu Z, Zhou M, Ke A, Li H, Xu J, Brendel M, Maasch JRMA et al..  2024.  Identification of Parkinson's disease PACE subtypes and repurposing treatments through integrative analyses of multimodal data.. NPJ Digit Med. 7(1):184.
Zang C, Hou Y, Schenck EJ, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Nordvig AS et al..  2024.  Identification of risk factors of Long COVID and predictive modeling in the RECOVER EHR cohorts.. Commun Med (Lond). 4(1):130.
Lyu D, Wang X, Chen Y, Wang F.  2024.  Language model and its interpretability in biomedicine: A scoping review.. iScience. 27(4):109334.
Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y.  2024.  Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique.. STAR Protoc. 5(2):103066.
Bai Z, Bartelo N, Aslam M, Murphy EA, Hale CR, Blachere NE, Parveen S, Spolaore E, DiCarlo E, Gravallese EM et al..  2024.  Synovial fibroblast gene expression is associated with sensory nerve growth and pain in rheumatoid arthritis.. Sci Transl Med. 16(742):eadk3506.
Bai Z, Bartelo N, Aslam M, Murphy EA, Hale CR, Blachere NE, Parveen S, Spolaore E, DiCarlo E, Gravallese EM et al..  2024.  Synovial fibroblast gene expression is associated with sensory nerve growth and pain in rheumatoid arthritis.. Sci Transl Med. 16(742):eadk3506.
2023
Su C, Hou Y, Zhou M, Rajendran S, Maasch JRMA, Abedi Z, Zhang H, Bai Z, Cuturrufo A, Guo W et al..  2023.  Biomedical discovery through the integrative biomedical knowledge hub (iBKH).. iScience. 26(4):106460.
Wang D, Fan F, Wu Z, Liu R, Wang F, Yu H.  2023.  CTformer: convolution-free Token2Token dilated vision transformer for low-dose CT denoising.. Phys Med Biol. 68(6)
Zang C, Zhang Y, Xu J, Bian J, Morozyuk D, Schenck EJ, Khullar D, Nordvig AS, Shenkman EA, Rothman RL et al..  2023.  Data-driven analysis to understand long COVID using electronic health records from the RECOVER initiative.. Nat Commun. 14(1):1948.
Zhang H, Zang C, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Zhang Y, Nordvig AS et al..  2023.  Data-driven identification of post-acute SARS-CoV-2 infection subphenotypes.. Nat Med. 29(1):226-235.
Varma JK, Zang C, Carton TW, Block JP, Khullar DJ, Zhang Y, Weiner MG, Rothman RL, Schenck EJ, Xu Z et al..  2023.  Excess burden of respiratory and abdominal conditions following COVID-19 infections during the ancestral and Delta variant periods in the United States: An EHR-based cohort study from the RECOVER Program.. medRxiv.
Adekkanattu P, Rasmussen LV, Pacheco JA, Kabariti J, Stone DJ, Yu Y, Jiang G, Luo Y, Brandt PS, Xu Z et al..  2023.  Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study.. Sci Rep. 13(1):294.
Zang C, Hou Y, Schenck E, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Nordvig A et al..  2023.  Risk Factors and Predictive Modeling for Post-Acute Sequelae of SARS-CoV-2 Infection: Findings from EHR Cohorts of the RECOVER Initiative.. Res Sq.
Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y.  2023.  Single-cell multi-omic topic embedding reveals cell-type-specific and COVID-19 severity-related immune signatures.. bioRxiv.
2022
Mehta B, Ho K, Ling V, Goodman S, Parks M, Ravi B, Banerjee S, Wang F, Ibrahim S, Cram P.  2022.  Are Income-based Differences in TKA Use and Outcomes Reduced in a Single-payer System? A Large-database Comparison of the United States and Canada. Clin Orthop Relat Res. 480(9):1636-1645.
Lin M, Hou B, Liu L, Gordon M, Kass M, Wang F, Van Tassel SH, Peng Y.  2022.  Automated diagnosing primary open-angle glaucoma from fundus image by simulating human's grading with deep learning.. Sci Rep. 12(1):14080.
Lin M, Hou B, Liu L, Gordon M, Kass M, Wang F, Van Tassel SH, Peng Y.  2022.  Automated diagnosing primary open-angle glaucoma from fundus image by simulating human's grading with deep learning.. Sci Rep. 12(1):14080.
Adler DA, Wang F, Mohr DC, Estrin D, Livesey C, Choudhury T.  2022.  A call for open data to develop mental health digital biomarkers.. BJPsych Open. 8(2):e58.
Yuan Z, Zhao Z, Sun H, Li J, Wang F, Yu S.  2022.  CODER: Knowledge-infused cross-lingual medical term embedding for term normalization.. J Biomed Inform. 126:103983.
Zeng X, Wang F, Luo Y, Kang S-G, Tang J, Lightstone FC, Fang EF, Cornell W, Nussinov R, Cheng F.  2022.  Deep generative molecular design reshapes drug discovery.. Cell Rep Med. 3(12):100794.