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2024
Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y.  2024.  Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique.. STAR Protoc. 5(2):103066.
Bai Z, Bartelo N, Aslam M, Murphy EA, Hale CR, Blachere NE, Parveen S, Spolaore E, DiCarlo E, Gravallese EM et al..  2024.  Synovial fibroblast gene expression is associated with sensory nerve growth and pain in rheumatoid arthritis.. Sci Transl Med. 16(742):eadk3506.
2025
Wang J, Ahn S, Taykhoom D, Zhang X, Chen B, Dodge H, Wang F, Zhou J.  2025.  Augmented Risk Prediction for Alzheimer’s Onset From Electronic Health Records With Large Language Models. Innovation In Aging. 9(Supplement 2)
Yang S, Li Y, Wheldon CW, Islam JY, Prosperi M, George TJ, Shenkman EA, Wang F, Bian J, Guo Y.  2025.  The Burden of Cancer and Precancerous Conditions Among Transgender Individuals in a Large Health Care Network: Retrospective Cohort Study.. JMIR Cancer. 11:e73843.
Wu Q, Reps JM, Li L, Zhang B, Lu Y, Tong J, Zhang D, Lumley T, Brand MT, van Zandt M et al..  2025.  COLA-GLM: collaborative one-shot and lossless algorithms of generalized linear models for decentralized observational healthcare data.. NPJ Digit Med. 8(1):442.
Mehta B, Yiyuan Y, Pearce-Fisher D, Ho K, Goodman SM, Parks ML, Wang F, Fontana MA, Ibrahim S, Cram P et al..  2025.  Comparing Community-Level Social Determinants of Health With Patient Race in Total Hip Arthroplasty Outcomes.. Arthritis Care Res (Hoboken). 77(7):892-899.
Wang F.  2025.  The crisis of biomedical foundation models.. J Biomed Inform. 171:104917.
Kauffman J, Miotto R, Klang E, Costa A, Norgeot B, Zitnik M, Khader S, Wang F, Nadkarni GN, Glicksberg BS.  2025.  Embedding Methods for Electronic Health Record Research.. Annu Rev Biomed Data Sci. 8(1):563-590.
Li H, Zang C, Xu Z, Pan W, Rajendran S, Chen Y, Wang F.  2025.  Federated target trial emulation using distributed observational data for treatment effect estimation.. NPJ Digit Med. 8(1):387.
Ghosh AK, Soroka O, Safford M, Shapiro MF, Wang F, Johnson GD, Civelek Y, DiMaggio C, Abramson D.  2025.  Hurricane Exposure and Risk of Long-Term Cardiovascular Disease Outcomes.. JAMA Netw Open. 8(9):e2530335.
Pan W, Hathi D, Xu Z, Zhang Q, Li Y, Wang F.  2025.  Identification of predictive subphenotypes for clinical outcomes using real world data and machine learning.. Nat Commun. 16(1):3797.
Huang Y, Xu J, Fan Z, Hu Y, He X, Chen A, Liu Y, Yin R, Guo J, DeKosky ST et al..  2025.  Identifying Alzheimer's Disease Progression Subphenotypes via a Graph-based Framework using Electronic Health Records.. Res Sq.
Sacco SJ, Chen K, Jin J, Tang B, Wang F, Aseltine RH.  2025.  Identifying patients at risk of suicide using data from health information exchanges.. BMC Public Health. 25(1):1582.
Zhou M, Tang AS, Zhang H, Xu Z, Ke AMC, Su C, Huang Y, Mantyh WG, Jaffee MS, Rankin KP et al..  2025.  Identifying progression subphenotypes of Alzheimer's disease from large-scale electronic health records with machine learning.. J Biomed Inform. 165:104820.
Zolin A, Ooi H, Zhou M, Su C, Wang F, Sarva H.  2025.  Liver fibrosis associated with more severe motor deficits in early Parkinson's disease.. Clin Neurol Neurosurg. 252:108861.
Zang C, Guth D, Bruno AM, Xu Z, Li H, Ammar N, Chew R, Guthe N, Hadley E, Kaushal R et al..  2025.  Long COVID after SARS-CoV-2 during pregnancy in the United States.. Nat Commun. 16(1):3005.
Rajendran S, Xu Z, Pan W, Zang C, Siempos I, Torres L, Xu J, Bian J, Schenck EJ, Wang F.  2025.  Multicenter target trial emulation to evaluate corticosteroids for sepsis stratified by predicted organ dysfunction trajectory.. Nat Commun. 16(1):4450.
Bai Z, Osman M, Brendel M, Tangen CM, Flaig TW, Thompson IM, Plets M, M Lucia S, Theodorescu D, Gustafson D et al..  2025.  Predicting response to neoadjuvant chemotherapy in muscle-invasive bladder cancer via interpretable multimodal deep learning.. NPJ Digit Med. 8(1):174.
Cui H, Lu J, Xu R, Wang S, Ma W, Yu Y, Yu S, Kan X, Ling C, Zhao L et al..  2025.  A review on knowledge graphs for healthcare: Resources, applications, and promises.. J Biomed Inform. 169:104861.
Wang X, Huey SL, Sheng R, Mehta S, Wang F.  2025.  SciDaSynth: Interactive Structured Data Extraction From Scientific Literature With Large Language Model.. Campbell Syst Rev. 21(4):e70073.
Liu M, Ning Y, Teixayavong S, Liu X, Mertens M, Shang Y, Li X, Miao D, Liao J, Xu J et al..  2025.  A scoping review and evidence gap analysis of clinical AI fairness.. NPJ Digit Med. 8(1):360.
Aseltine RH, Sacco SJ, Rogers S, Wang F, Schwartz H, Chen K.  2025.  Screening and Risk Algorithms for Detecting Pediatric Suicide Risk in the Emergency Department.. JAMA Netw Open. 8(9):e2533505.
Fan F-L, Li Y, Zeng T, Wang F.  2025.  Towards NeuroAI: introducing neuronal diversity into artificial neural networks. Med-X. 3:2.
Tong J, Reps JM, Luo C, Lu Y, Li L, Ramirez-Anguita JManuel, Brand MT, DuVall SL, Falconer T, Fuentes AMayer et al..  2025.  Unlocking efficiency in real-world collaborative studies: a multi-site international study with one-shot lossless GLMM algorithm.. NPJ Digit Med. 8(1):457.
2026
Massara P, Kirkland J, Pagani I, Huey SL, Hirsh H, McDonald D, Patel L, Finkelstein JL, Gantz M, Wang F et al..  2026.  Applying Artificial Intelligence and machine learning in precision nutrition.. Nat Commun. 17(1)