Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data.

TitleDevelop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data.
Publication TypeJournal Article
Year of Publication2024
AuthorsHe X, Wei R, Huang Y, Chen Z, Lyu T, Bost S, Tong J, Li L, Zhou Y, Li Z, Guo J, Tang H, Wang F, DeKosky S, Xu H, Chen Y, Zhang R, Xu J, Guo Y, Wu Y, Bian J
JournalAlzheimers Dement (Amst)
Volume16
Issue3
Paginatione12613
Date Published2024 Jul-Sep
ISSN2352-8729
Abstract

INTRODUCTION: Alzheimer's disease (AD) is often misclassified in electronic health records (EHRs) when relying solely on diagnosis codes. This study aimed to develop a more accurate, computable phenotype (CP) for identifying AD patients using structured and unstructured EHR data.

METHODS: We used EHRs from the University of Florida Health (UFHealth) system and created rule-based CPs iteratively through manual chart reviews. The CPs were then validated using data from the University of Texas Health Science Center at Houston (UTHealth) and the University of Minnesota (UMN).

RESULTS: Our best-performing CP was "patient has at least 2 AD diagnoses and AD-related keywords in AD encounters," with an F1-score of 0.817 at UF, 0.961 at UTHealth, and 0.623 at UMN, respectively.

DISCUSSION: We developed and validated rule-based CPs for AD identification with good performance, which will be crucial for studies that aim to use real-world data like EHRs.

HIGHLIGHTS: Developed a computable phenotype (CP) to identify Alzheimer's disease (AD) patients using EHR data.Utilized both structured and unstructured EHR data to enhance CP accuracy.Achieved a high F1-score of 0.817 at UFHealth, and 0.961 and 0.623 at UTHealth and UMN.Validated the CP across different demographics, ensuring robustness and fairness.

DOI10.1002/dad2.12613
Alternate JournalAlzheimers Dement (Amst)
PubMed ID38966622
PubMed Central IDPMC11220631
Grant ListR56 AG069880 / AG / NIA NIH HHS / United States
R01 AG080991 / AG / NIA NIH HHS / United States
R01 AG076234 / AG / NIA NIH HHS / United States
R01 AG078154 / AG / NIA NIH HHS / United States
R01 AG080624 / AG / NIA NIH HHS / United States
Division: 
Institute of Artificial Intelligence for Digital Health
Category: 
Faculty Publication