Population Health Sciences

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2024

Pan W, Xu Z, Rajendran S, Wang F. 2024. An adaptive federated learning framework for clinical risk prediction with electronic health records from multiple hospitals.. Patterns (N Y). 5(1):100898.

Bruno AM, Zang C, Xu Z, Wang F, Weiner MG, Guthe N, Fitzgerald M, Kaushal R, Carton TW, Metz TD. 2024. Association between acquiring SARS-CoV-2 during pregnancy and post-acute sequelae of SARS-CoV-2 infection: RECOVER electronic health record cohort analysis.. EClinicalMedicine. 73:102654.

He X-Y, Gao Y, Ng D, Michalopoulou E, George S, Adrover JM, Sun L, Albrengues J, Daßler-Plenker J, Han X et al.. 2024. Chronic stress increases metastasis via neutrophil-mediated changes to the microenvironment.. Cancer Cell. 42(3):474-486.e12.

He X, Wei R, Huang Y, Chen Z, Lyu T, Bost S, Tong J, Li L, Zhou Y, Li Z et al.. 2024. Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data.. Alzheimers Dement (Amst). 16(3):e12613.

Su C, Hou Y, Xu J, Xu Z, Zhou M, Ke A, Li H, Xu J, Brendel M, Maasch JRMA et al.. 2024. Identification of Parkinson's disease PACE subtypes and repurposing treatments through integrative analyses of multimodal data.. NPJ Digit Med. 7(1):184.

Zang C, Hou Y, Schenck EJ, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Nordvig AS et al.. 2024. Identification of risk factors of Long COVID and predictive modeling in the RECOVER EHR cohorts.. Commun Med (Lond). 4(1):130.

Wang F, Beecy A. 2024. Implementing AI models in clinical workflows: a roadmap.. BMJ Evid Based Med.

Lyu D, Wang X, Chen Y, Wang F. 2024. Language model and its interpretability in biomedicine: A scoping review.. iScience. 27(4):109334.

Rajendran S, Pan W, Sabuncu MR, Chen Y, Zhou J, Wang F. 2024. Learning across diverse biomedical data modalities and cohorts: Challenges and opportunities for innovation.. Patterns (N Y). 5(2):100913.

S R, Q Z, J M, M M, K M, Z R, O E, N Z, I H. 2024. O-321 A foundation model for embryology trained on time-lapse images. Human Reproduction. 39(Supplement 1 July 2024)

Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y. 2024. Protocol to perform integrative analysis of high-dimensional single-cell multimodal data using an interpretable deep learning technique.. STAR Protoc. 5(2):103066.

Bai Z, Bartelo N, Aslam M, Murphy EA, Hale CR, Blachere NE, Parveen S, Spolaore E, DiCarlo E, Gravallese EM et al.. 2024. Synovial fibroblast gene expression is associated with sensory nerve growth and pain in rheumatoid arthritis.. Sci Transl Med. 16(742):eadk3506.

2023

Su C, Hou Y, Zhou M, Rajendran S, Maasch JRMA, Abedi Z, Zhang H, Bai Z, Cuturrufo A, Guo W et al.. 2023. Biomedical discovery through the integrative biomedical knowledge hub (iBKH).. iScience. 26(4):106460.

Wang D, Fan F, Wu Z, Liu R, Wang F, Yu H. 2023. CTformer: convolution-free Token2Token dilated vision transformer for low-dose CT denoising.. Phys Med Biol. 68(6)

Rajendran S, Xu Z, Pan W, Ghosh A, Wang F. 2023. Data heterogeneity in federated learning with Electronic Health Records: Case studies of risk prediction for acute kidney injury and sepsis diseases in critical care.. PLOS Digit Health. 2(3):e0000117.

Zang C, Zhang Y, Xu J, Bian J, Morozyuk D, Schenck EJ, Khullar D, Nordvig AS, Shenkman EA, Rothman RL et al.. 2023. Data-driven analysis to understand long COVID using electronic health records from the RECOVER initiative.. Nat Commun. 14(1):1948.

Zhang H, Zang C, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Zhang Y, Nordvig AS et al.. 2023. Data-driven identification of post-acute SARS-CoV-2 infection subphenotypes.. Nat Med. 29(1):226-235.

Varma JK, Zang C, Carton TW, Block JP, Khullar DJ, Zhang Y, Weiner MG, Rothman RL, Schenck EJ, Xu Z et al.. 2023. Excess burden of respiratory and abdominal conditions following COVID-19 infections during the ancestral and Delta variant periods in the United States: An EHR-based cohort study from the RECOVER Program.. medRxiv.

Zhang Y, Hu H, Fokaidis V, V CLewis, Xu J, Zang C, Xu Z, Wang F, Koropsak M, Bian J et al.. 2023. Identifying environmental risk factors for post-acute sequelae of SARS-CoV-2 infection: An EHR-based cohort study from the recover program.. Environ Adv. 11:100352.

Xu J, Zhang H, Zhang H, Bian J, Wang F. 2023. Machine learning enabled subgroup analysis with real-world data to inform clinical trial eligibility criteria design.. Sci Rep. 13(1):613.

Mehta B, Goodman S, DiCarlo E, Jannat-Khah D, J Gibbons AB, Otero M, Donlin L, Pannellini T, Robinson WH, Sculco P et al.. 2023. Machine learning identification of thresholds to discriminate osteoarthritis and rheumatoid arthritis synovial inflammation.. Arthritis Res Ther. 25(1):31.

Adekkanattu P, Rasmussen LV, Pacheco JA, Kabariti J, Stone DJ, Yu Y, Jiang G, Luo Y, Brandt PS, Xu Z et al.. 2023. Prediction of left ventricular ejection fraction changes in heart failure patients using machine learning and electronic health records: a multi-site study.. Sci Rep. 13(1):294.

Khullar D, Zhang Y, Zang C, Xu Z, Wang F, Weiner MG, Carton TW, Rothman RL, Block JP, Kaushal R. 2023. Racial/Ethnic Disparities in Post-acute Sequelae of SARS-CoV-2 Infection in New York: an EHR-Based Cohort Study from the RECOVER Program.. J Gen Intern Med. :1-10.

Zang C, Hou Y, Schenck E, Xu Z, Zhang Y, Xu J, Bian J, Morozyuk D, Khullar D, Nordvig A et al.. 2023. Risk Factors and Predictive Modeling for Post-Acute Sequelae of SARS-CoV-2 Infection: Findings from EHR Cohorts of the RECOVER Initiative.. Res Sq.

Zhou M, Zhang H, Bai Z, Mann-Krzisnik D, Wang F, Li Y. 2023. Single-cell multi-omic topic embedding reveals cell-type-specific and COVID-19 severity-related immune signatures.. bioRxiv.